| Woodland Christian School | 9.3 |
Regular elementary or secondary | KG-8 | 27 | 13.5 | Seventh-Day Adventist |
| St Joseph Elem School | 9.3 |
Regular elementary or secondary | Pre-KG-8 | 117 | 10.6 | Roman Catholic |
| St Paul Evang Lutheran School | 9.8 |
Regular elementary or secondary | Pre-KG-8 | 222 | 17.9 | Wisconsin Evangelical Lutheran Synod |
| Martin Luther Christian School | 9.9 |
Regular elementary or secondary | Pre-KG-5 | 49 | 6.6 | Evangelical Lutheran Church in America |
| St Paul's Lutheran School | 10.4 |
Regular elementary or secondary | Pre-KG-8 | 175 | 15.9 | Wisconsin Evangelical Lutheran Synod |
| Rock Prairie Montessori | 10.6 |
Montessori | Pre-KG-3 | 34 | 10.3 | Nonsectarian |
| St Ann School | 11.0 |
Regular elementary or secondary | KG-6 | 167 | 17.4 | Roman Catholic |
| St Matthews Lutheran School | 12.3 |
Regular elementary or secondary | Pre-KG-8 | 116 | 18.1 | Wisconsin Evangelical Lutheran Synod |
| St Mary Elementary School | 12.8 |
Regular elementary or secondary | Pre-KG-8 | 132 | 10.7 | Roman Catholic |
| St Pauls Lutheran School | 12.9 |
Regular elementary or secondary | Pre-KG-8 | 269 | 12.5 | Lutheran Church - Missouri Synod |
| St William Catholic School | 12.9 |
Regular elementary or secondary | Pre-KG-8 | 180 | 14.5 | Roman Catholic |
| St John Vianney School | 13.2 |
Regular elementary or secondary | Pre-KG-8 | 239 | 18.4 | Roman Catholic |
| St Patrick Elem School | 13.4 |
Regular elementary or secondary | Pre-KG-8 | 83 | 8.1 | Roman Catholic |
| St Johns Lutheran School | 14.6 |
Regular elementary or secondary | Pre-KG-8 | 107 | 14.7 | Wisconsin Evangelical Lutheran Synod |
| St John The Baptist School | 14.7 |
Regular elementary or secondary | Pre-KG-8 | 170 | 15.4 | Roman Catholic |
| Rock County Christian School-janesville | 18.3 |
Regular elementary or secondary | Pre-KG-5 | 78 | 11.3 | Christian (no specific denomination) |
| St Peters Lutheran School | 19.2 |
Regular elementary or secondary | Pre-KG-8 | 62 | 12.2 | Wisconsin Evangelical Lutheran Synod |
| Three Angels Christian School | 19.4 |
Regular elementary or secondary | Pre-KG-8 | 21 | 7.0 | Latter Day Saints |
| Immaculate Heart Of Mary School | 20.6 |
Regular elementary or secondary | Pre-KG-8 | 117 | 9.4 | Roman Catholic |
| St Dennis School | 21.3 |
Regular elementary or secondary | KG-8 | 214 | 15.7 | Roman Catholic |
| St Josephs School | 21.5 |
Regular elementary or secondary | Pre-KG-6 | 70 | 15.6 | Roman Catholic |
| St John Evang Lutheran School | 21.8 |
Regular elementary or secondary | KG-8 | 61 | 12.0 | Wisconsin Evangelical Lutheran Synod |
| Madinah Academy Of Madison | 22.3 |
Alternative/other | Pre-KG-3 | 13 | 1.9 | Islamic |
| Eagle School | 22.5 |
Special program emphasis | KG-8 | 181 | 9.9 | Nonsectarian |
| Holy Cross Lutheran School | 22.8 |
Regular elementary or secondary | Pre-KG-8 | 91 | 9.7 | Other Lutheran |
| Eastside Lutheran School | 23.1 |
Regular elementary or secondary | Pre-KG-8 | 85 | 13.3 | Wisconsin Evangelical Lutheran Synod |
| St James Catholic School | 23.6 |
Regular elementary or secondary | Pre-KG-8 | 170 | 14.9 | Roman Catholic |
| Sacred Hearts School | 23.9 |
Regular elementary or secondary | Pre-KG-8 | 414 | 19.4 | Roman Catholic |
| Edgewood Campus School | 24.0 |
Regular elementary or secondary | Pre-KG-8 | 288 | 13.7 | Roman Catholic |
| Peace Lutheran School & Pre-k | 24.1 |
Regular elementary or secondary | Pre-KG-8 | 83 | 16.6 | Wisconsin Evangelical Lutheran Synod |
| Blessed Sacrament School | 24.3 |
Regular elementary or secondary | Pre-KG-8 | 311 | 16.3 | Roman Catholic |
| Madison Central Montessori | 24.5 |
Montessori | Pre-KG-8 | 89 | 7.7 | Nonsectarian |
| St Johns Lutheran School | 25.0 |
Regular elementary or secondary | Pre-KG-8 | 30 | 4.6 | Lutheran Church - Missouri Synod |
